I know it's been a long time since you asked this question but maybe you will find this information helpful.
There is an abandoned Zion Presbyterian Church in Colfax county Nebraska, southeast of Clarkson, NE. It is on the northeast corner of the intersection of Nebraska highway 15 and County road 'U' (2 miles south of Hwy 91). I did not see a parsonage, but there is a cemetery across the road filled with Czech graves.
This location is straight north of Schulyer, Nebraska (I'd say 17 miles) and is 6 miles from the New Zion Church in Clarkson.
Information from the internet, says this church closed in 1975. I am not a member of the church and have not connection with this subject. I don't know what happened to the church. I would say the rural location, old building and probable declining membership played a part in the closing.