So I have figured most of the problem out. It is a corrupt file. It is getting corrupted per FTM some how. I went back to a file I knew was not and reloaded it. Lost about 6 hours of stuff I input by hand. I compacted and backed up that file and deleted ALL of the other corrupted ones and backed up ones.
I have been compacting the file prior to backing up this file now. Been coing ok for a few weeks. will see.