RootsMagic has a WebSearch feature with which you can search the following sites:
Ancestry
Ancestry Message Boards
Family Search
Find A Grave
Fold3
GenealogyBank
Google
Bing
RootsWeb
World Vital Records
Yahoo

Those are the "standard" sites. You can also set up "Custom Search Providers" very simply.

I have never used FTM, so have no idea how you "use" it with any version of Ancestry.